## Gravitational Sedimentation Calculator

### Quick Start

There is confusion between "dispersions" which are supposed to settle over time and "solutions" which don't. The distinction is false - the same sized nanoparticle and large molecule will settle with exactly the same rules, eventually reaching a steady, exponentially increasing concentration gradient. These rules aren't, at first, intuitive so the app illustrates what happens in a column of the right length, left undisturbed for the right length of time.

### Gravitational Sedimentation

_{p}g/cc

_{l}g/cc

_{equil}days: c

_{max}

The calculations here are based on the famous Mason & Weaver^{1} paper from 1924. We have a column length l, a particle (or molecule) of radius r (and therefore volume V=4/3πr³) and density ρ (here assumed always to be larger than that of the solvent, with the difference being δ). For those with large polymers and biomaterials of known MWt, you can use the estimator^{2} to find an appropriate equivalent radius. The solvent viscosity is η and the initial (relative) concentration is 1 down the length of the column.

The Mason-Weaver solver used in an earlier version of this app has numerical problems. So now we use the solver provided by a team^{3} led by Prof Martinus Werts at Ecole normale supérieure de Rennes. As a bonus we get to see a picture of the Boltzmann Distribution. I am especially grateful that Prof Werts and colleagues provided a clear Python program and explanation of their algorithm (I wish all academics would be so thoughtful) that I could readily translate into JavaScript, and for permission to show the amazing Boltzmann image.

A key trick in the Werts algorithm is to define a characteristic height, z_{0} which we can calculate directly from our inputs:

`z_0=(3kT)/(4πrδg)` along with `z_(max)=l/z_0`

From these we get B which is the relative increase in concentration at the bottom at equilibrium, assuming a concentration of 1 at t=0:

`B=z_(max)/(z_0(1-exp((-z_(max))/z_0)))`

We also get a curve of concentration versus height,z, at infinite time:

`c(z)=B.exp((-z)/z_0)`

We need a diffusion coefficient D and a sedimentation coefficient s which, for convenience is defined with respect to D and z_{0}, and from which we can calculate the time to equilibrium:

`D=(kT)/(6πηr)` and `s=D/(z_0g)` and `t_(equil)=1.4z_(max)/(sg)`

The numerical solver takes those inputs, turns them into non-dimensional parameters (so the output plot is 0 to 100%) and goes stepwise through time using the Mason-Weaver differential equation:

`(δc)/(δt)=D(δ^2c)/(δz^2)+"sg"(δc)/(δz)`

Like all numerical simulations, they can start to blow up under tricky circumstances. If you start seeing problems, increase the **Numerics** slider from its default value of NF = 1. As you increase it, the calculations get slower (we are using a grid of NF.400 x NF.200 in time and space), so don't go higher than necessary.

### Who cares?

Those who handle nanoparticles will benefit from exploring the app, for three reasons. First, it gives some idea of timescales. Second, and more importantly, *because there is a big difference from this thermodynamic concentration gradient and "crashing out" of particles via, say, flocculation*. It is important for the nanoparticle world to understand that gravity is *not* a way to distinguish "soluble" molecules from "dispersed" particles. A large DNA molecule behaves identically to a similar-sized nanoparticle. Thirdly because it's awesome to see a picture of the Boltzmann distribution. Yes, the curve at equilibrium is the Boltzmann distribution and this image of the red gold nanoparticles from the Werts' website (which also has lots of excellent Python scripts!) shows the equilibrium concentration for r=10, 20 and 30nm, l=15, ρ~20 with the water having a density of 1 and viscosity of 1.6. You can readily simulate them in the app.

Why is it the Boltzmann distribution? The equilibrium (which has nothing to do with Brownian motion) is between the chemical potential gradient of the gold particles and the gravitational potential. Gravity pulls the particles to a greater concentration, but that produces a counter-potential from concentration. The result is an exponential gradient governed by the Boltzmann constant *k*. As the Werts paper puts it, "*The same result for the equilibrium gradient can be obtained using a statistical mechanical approach, i.e., calculating the Boltzmann distribution for dense suspended particles of buoyant mass m _{b} in a gravitationalfield (E_{particle} = m_{b}gz), illustrating that the digital image of the gold nanoparticle solution at equilibrium is a photograph of a Boltzmann distribution.*". Or if we look again at the equation for the concentration versus depth this is:

`c(z)=B.exp((-z)/z_0) = B.exp((-z4πrδg)/(3kT)) = B.exp((-E)/(kT)) = "Boltzmann"`

*The Werts experiments were done at 4°C (to minimize convection currents) but the app uses a fixed 25°C. Because kT is in °K, the difference of 277/298 in the exponential is not significant - and there's no room for a T slider!*

But there's another amazing reason. Via a trick using osmotic membranes^{4}, you can establish *exactly* the same gradient (i.e. the osmotic trick does not change the thermodynamics) in hours or days rather than months or years. So a 10cm column containing blue dextrin of MWt ~ 2million which would take years to settle normally, can produce a visible gradient in a day or so. This has been known for decades but has not been exploited recently - and deserves to be.

The inspiration for writing this app came from Dr Seishi Shimizu of U. York. Until he pointed it all out, I had been completely unaware of the theory or its significance in the debate about nanoparticles being "soluble" (which they are) rather than "dispersed" (an undefined and confusingly unhelpful term).

^{1}M. Mason and W. Weaver, Phys. Rev., 23, 412 (1924), also W. Weaver, Phys. Rev., 27, 499 (1926).

^{2}The volume, `V=(MWt)/(N.ρ)` so `r=(V/(1.333.π))^0.333`.

^{3}Johanna Midelet, Afaf H. El-Sagheer, Tom Brown, Antonios G. Kanaras and Martinus H. V. Werts, *The Sedimentation of Colloidal Nanoparticles in Solution and Its Study Using Quantitative Digital Photography*, Part. Part. Syst. Charact. 2017, 34, 1700095

^{4}Alfredo T. N. Pires, Suzana P. Nunes, and Fernando Galembeck, *Osmosedimentation: Approach to Sedimentation Equilibrium under Gravity*, Journal of Colloid and Interface Science, 98, 1984, 489-493